Microbial evolution, systematics and taxonomy

1. Microbial Evolution

Evolution in microbiology refers to how microorganisms originated, diversified, and adapted to various environments.

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a) Origin of Microorganisms

  • Life is believed to have originated ~3.5–4.0 billion years ago.
  • RNA world hypothesis: RNA was the first genetic material; microbes evolved from self-replicating RNA molecules.
  • Fossil evidence: Stromatolites (cyanobacteria-like structures) are among the earliest microbial fossils.

b) Major Events in Microbial Evolution

  • Prokaryotic cells (Archaea & Bacteria) were the first life forms.
  • Photosynthetic bacteria (cyanobacteria) evolved oxygenic photosynthesis → led to the “oxygen revolution” (~2.4 billion years ago).
  • Endosymbiotic theory: Eukaryotic cells evolved when ancestral eukaryotes engulfed prokaryotic cells, which became mitochondria and chloroplasts.
  • Continuous genetic change occurs through mutation, horizontal gene transfer (HGT), and natural selection.

c) Evolutionary Forces in Microbes

  • Mutation: Random changes in DNA.
  • Horizontal gene transfer: Transformation, transduction, conjugation.
  • Selection pressure: Antibiotic resistance, environmental adaptation.
  • Speciation: Formation of new microbial species under isolation and adaptation.

2. Systematics in Microbiology

Systematics = Study of the diversity of organisms and their evolutionary relationships.

Components of Microbial Systematics

  1. Classification → arranging organisms into groups (taxa) based on similarities.
  2. Nomenclature → assigning names according to internationally accepted rules.
  3. Identification → determining whether a particular isolate belongs to a known taxon.

Approaches in Microbial Systematics

  • Phenetic approach (classical): Based on morphology, physiology, biochemical traits.
  • Genotypic approach: Based on DNA-DNA hybridization, GC content, sequence similarity.
  • Phylogenetic approach: Based on evolutionary relatedness using rRNA sequencing (16S rRNA for prokaryotes, 18S rRNA for eukaryotes).

3. Microbial Taxonomy

Taxonomy = The science of classification, nomenclature, and identification of organisms.

a) Levels of Taxonomy (Hierarchical System)

  • Domain → Kingdom → Phylum → Class → Order → Family → Genus → Species → Subspecies/Strain.

b) The Three-Domain System (Carl Woese, 1977)

Based on 16S rRNA sequencing:

  1. Bacteria → True prokaryotes (e.g., E. coli).
  2. Archaea → Methanogens, halophiles, thermophiles.
  3. Eukarya → Protists, fungi, plants, animals.

c) Nomenclature Rules

  • Governed by the International Code of Nomenclature of Bacteria (ICNB).
  • Names usually derived from Latin/Greek.
  • Binomial system (Genus + species, italicized, e.g., Escherichia coli).

d) Modern Taxonomic Tools

  • Molecular techniques: rRNA sequencing, whole-genome sequencing, multilocus sequence typing (MLST).
  • Chemotaxonomy: Based on cell wall components, fatty acids, quinones.
  • Numerical taxonomy: Use of computers to compare large sets of phenotypic traits.

4. Significance of Microbial Evolution, Systematics, and Taxonomy

  • Evolution: Explains origin and adaptation of microbial diversity.
  • Systematics: Provides framework for studying microbial ecology, biotechnology, and medicine.
  • Taxonomy: Ensures accurate communication, identification of pathogens, and discovery of new species.

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